Name: RenLab-HiC-cortex Rep1
Organism: Mus musculus
Source: Mouse cortex
RE: HindIII
Sample ID: GSM938750
| File | SRR501772 | SRR501773 | SRR501774 | SRR501775 | SRR501776 |
|---|---|---|---|---|---|
| Total reads | 26,241,072 | 26,688,189 | 26,459,526 | 26,116,841 | 44,209,842 |
| First pair aligned | 23,127,474 (88.13%) | 23,730,961 (88.92%) | 23,694,677 (89.55%) | 23,365,054 (89.46%) | 39,259,625 (88.80%) |
| Second pair aligned | 21,294,849 (81.15%) | 23,216,385 (86.99%) | 23,333,789 (88.19%) | 23,025,870 (88.16%) | 38,254,961 (86.53%) |
| PCR duplicate paired reads | 485,508 (1.85%) | 549,837 (2.06%) | 558,827 (2.11%) | 547,749 (2.10%) | 1,211,382 (2.74%) |
| Chimeric paired reads | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) |
| Valid chimeric paired reads | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) |
| Total mapped/paired reads | 13,799,798 (52.59%) | 15,070,879 (56.47%) | 15,132,080 (57.19%) | 14,917,919 (57.12%) | 24,805,952 (56.11%) |
| Valid mapped/paired reads | 13,314,290 (50.74%) | 14,521,042 (54.41%) | 14,573,253 (55.08%) | 14,370,170 (55.02%) | 23,594,570 (53.37%) |
| File | SRR501777 |
|---|---|
| Total reads | 85,145,369 |
| First pair aligned | 75,767,102 (88.99%) |
| Second pair aligned | 73,952,985 (86.85%) |
| PCR duplicate paired reads | 3,663,545 (4.30%) |
| Chimeric paired reads | 0 (0.00%) |
| Valid chimeric paired reads | 0 (0.00%) |
| Total mapped/paired reads | 47,986,086 (56.36%) |
| Valid mapped/paired reads | 44,322,541 (52.06%) |
| Total reads | 124,695,866 |
| Chromosome not in fends | 0 (0.00%) |
| PCR duplicates | 0 (0.00%) |
| Outide RE cutsite range | 2,674,136 (2.14%) |
| Insert larger than cutoff | 53,890,465 (43.22%) |
| Fragment circularization | 1,400,963 (1.12%) |
| Possible failed RE digest | 13,506,627 (10.83%) |
| Valid cis reads | 17,380,982 (13.94%) |
| Valid trans reads | 35,842,693 (28.74%) |
| Unique cis fend pairs | 14,550,358 |
| Unique trans fend pairs | 32,360,001 |